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Data Descriptor: Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

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dc.contributor Univ Southern Calif
dc.contributor University Of Newcastle
dc.contributor Australian Institute Of Marine Science
dc.contributor Unsw Australia
dc.contributor Plant Funct Biol & Climate Change Cluster
dc.contributor Sch Math & Phys
dc.contributor Commonwealth Scientific & Industrial Research Organisation (csiro)
dc.contributor Deakin Univ
dc.contributor University Of Southern California
dc.contributor Csiro Ctr Environm & Life Sci
dc.contributor Univ Queensland
dc.contributor Australian Inst Marine Sci
dc.contributor Bioplatforms Australia
dc.contributor Office Of Environment & Heritage - New South Wales
dc.contributor Sch Environm & Life Sci
dc.contributor Macquarie University
dc.contributor Univ Technol
dc.contributor Dept Chem & Biomol Sci
dc.contributor Western Sydney Univ
dc.contributor Csiro Oceans & Atmosphere
dc.contributor Ctr Applicat Nat Resource Math
dc.contributor University Of New South Wales Sydney
dc.contributor Univ Newcastle
dc.contributor Australian Ctr Ecogen
dc.contributor Macquarie Univ
dc.contributor Western Sydney University
dc.contributor Ramaciotti Ctr Genom
dc.contributor Off Environm & Heritage
dc.contributor Deakin University
dc.contributor South Australian Res & Dev Inst
dc.contributor Geelong Ctr Emerging Infect Dis
dc.contributor Hawkesbury Inst Environm
dc.contributor Integrated Marine Observing Syst
dc.contributor University Of Queensland
dc.contributor University Of Technology Sydney
dc.contributor.author MOLTMANN, TIM
dc.contributor.author VAN DE KAMP, JODIE
dc.contributor.author HOLMES, BRONWYN
dc.contributor.author ABELL, GUY C. J.
dc.contributor.author KAHLKE, TIM
dc.contributor.author MCALLISTER, KIRSTY
dc.contributor.author WINDSOR, JONATHAN
dc.contributor.author CROSSING, RYAN
dc.contributor.author PATTEN, NICOLE
dc.contributor.author VAN RUTH, PAUL D.
dc.contributor.author FUHRMAN, JED A.
dc.contributor.author RICHARDSON, ANTHONY
dc.contributor.author BISSETT, ANDREW
dc.contributor.author FITZGERALD, ANNA
dc.contributor.author BODROSSY, LEVENTE
dc.contributor.author BROWN, MARK V.
dc.contributor.author OSTROWSKI, MARTIN
dc.contributor.author SEYMOUR, JUSTIN R.
dc.contributor.author INGLETON, TIM
dc.contributor.author MESSER, LAUREN F.
dc.contributor.author JEFFRIES, THOMAS
dc.contributor.author SIBONI, NAHSHON
dc.contributor.author LAVEROCK, BONNIE
dc.contributor.author BIBILONI-ISAKSSON, JAUME
dc.contributor.author NELSON, TIFFANIE M.
dc.contributor.author COMAN, FRANK
dc.contributor.author DAVIES, CLAIRE H.
dc.contributor.author FRAMPTON, DION
dc.contributor.author RAYNER, MARK
dc.contributor.author GOOSSEN, KIRIANNE
dc.contributor.author ROBERT, STAN
dc.contributor.author CRAW, PASCAL
dc.contributor.author SOW, SWAN LI SAN
dc.contributor.author SKUZA, MICHELE
dc.contributor.author MALTHOUSE, PAUL
dc.contributor.author PAULSEN, IAN
dc.contributor.author KOVAL, JASON
dc.date.accessioned 2018-07-29T18:55:10Z
dc.date.accessioned 2018-07-29T18:55:10Z
dc.date.accessioned 2019-05-09T01:25:55Z
dc.date.available 2018-07-29T18:55:10Z
dc.date.available 2018-07-29T18:55:10Z
dc.date.available 2019-05-09T01:25:55Z
dc.date.issued 2018-07-17
dc.identifier.citation Brown MV, van de Kamp J, Ostrowski M, Seymour JR, Ingleton T, Messer LF, Jeffries T, Siboni N, Laverock B, Bibiloni-Isaksson J, Nelson TM, Coman F, Davies CH, Frampton D, Rayner M, Goossen K, Robert S, Holmes B, Abell GCJ, Craw P, Kahlke T, Sow SLS, McAllister K, Windsor J, Skuza M, Crossing R, Patten N, Malthouse P, van Ruth PD, Paulsen I, Fuhrman JA, Richardson A, Koval J, Bissett A, Fitzgerald A, Moltmann T, Bodrossy L (2018) Data Descriptor: Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. Scientific Data 5
dc.identifier.issn 2052-4463
dc.identifier.uri http://epubs.aims.gov.au/11068/14701
dc.description.abstract Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span similar to 30 degrees of latitude and similar to 38 degrees longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.
dc.description.sponsorship The first three years of this project and part of the activities afterwards was funded by Australian Research Council awards DP0988002 to M.V.B. & JA.F., DP120102764 to J.S., M.V.B. & L.B., DP150102326 to M.V.B., M.O., JA.F. & L.B., the Environmental Genomics Project from CSIRO Oceans and Atmosphere and a CSIRO OCE Science Leader Fellowship to L.B.
dc.description.sponsorship Data sourced from and sample collection funded by the Integrated Marine Observing System (IMOS) - IMOS is a national collaborative research infrastructure, supported by the Australian Government. Sequencing and bioinformatics of this program is funded by Bioplatforms Australia (BPA). We would like to acknowledge the contribution of the Marine Microbes Project consortium (https://data.bioplatforms.com/organization/pages/bpa-marine-microbes/consortium) in the generation of data used in this publication. The Marine Microbes Project is supported by funding from Bioplatforms Australia through the Australian Government National Collaborative Research Infrastructure Strategy (NCRIS).
dc.language English
dc.subject Ribosomal-rna Sequences
dc.subject Environments
dc.subject Ocean
dc.subject Science & Technology - Other Topics
dc.subject Reads
dc.subject Diversity
dc.subject Multidisciplinary Sciences
dc.subject Archaea
dc.subject Taxonomy
dc.title Data Descriptor: Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative
dc.type journal article
dc.identifier.doi 10.1038/sdata.2018.130
dc.identifier.wos WOS:000438868700003


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