Publication Repository

Minimum Information about an Uncultivated Virus Genome (MIUViG)

Show simple item record

dc.contributor Agroparistech
dc.contributor Ihu Mediterranee Infect
dc.contributor Universite Paris Saclay
dc.contributor Max Planck Tandem Grp Computat Biol
dc.contributor Univ Liverpool
dc.contributor Montana State University System
dc.contributor Univ Delaware
dc.contributor Microbial Physiol Grp
dc.contributor Vanderbilt Inst Infect Immunol & Inflammat
dc.contributor Inra
dc.contributor Cnrs
dc.contributor Univ Miguel Hernandez
dc.contributor Univ S Florida
dc.contributor Loyola University Chicago
dc.contributor Sch Biosci
dc.contributor State University System Of Florida
dc.contributor United States Department Of Energy (doe)
dc.contributor Arizona State Univ
dc.contributor Texas A&m University System
dc.contributor University Of Hawaii System
dc.contributor European Mol Biol Lab
dc.contributor Cairo University
dc.contributor Mephi
dc.contributor University Of Michigan System
dc.contributor Kyoto Univ
dc.contributor J. Craig Venter Institute
dc.contributor Dept Marine Biol
dc.contributor Univ Toulon & Var
dc.contributor Max Planck Inst Marine Microbiol
dc.contributor Dept Mol Biol & Biochem
dc.contributor Niaid
dc.contributor Joint Genome Institute - Jgi
dc.contributor Dept Ecol & Evolutionary Biol
dc.contributor Natl Inst Genet
dc.contributor Univ Los Andes
dc.contributor Res Network Chem Meets Microbiol
dc.contributor Vanderbilt Genet Inst
dc.contributor Research Organization Of Information & Systems (rois)
dc.contributor Colorado State University
dc.contributor Oregon State University
dc.contributor Universidad Miguel Hernandez De Elche
dc.contributor University Of Cape Town
dc.contributor University Of Vienna
dc.contributor Oregon State Univ
dc.contributor Soil & Crop Sci Dept
dc.contributor Joint Bioenergy Institute - Jbei
dc.contributor University Of South Florida
dc.contributor Dept Microbiol & Ecosyst Sci
dc.contributor University Of California Irvine
dc.contributor Univ British Columbia
dc.contributor Struct Biol Res Unit
dc.contributor Ddbj Ctr
dc.contributor Vanderbilt University
dc.contributor European Molecular Biology Laboratory (embl)
dc.contributor Montana State University
dc.contributor Institut National De La Recherche Agronomique (inra)
dc.contributor Dept Physiol Genet & Microbiol
dc.contributor Ctr Microbial Oceanog Res & Educ
dc.contributor Biodesign Ctr Fundamental & Appl Microbiom
dc.contributor University System Of Maryland
dc.contributor Dept Biol
dc.contributor Katholieke Univ Leuven
dc.contributor Scripps Inst Oceanog
dc.contributor National Institutes Of Health (nih) - Usa
dc.contributor University Of Tennessee System
dc.contributor Radboud University Nijmegen
dc.contributor Unite Biol Mol Gene Chez Extremophiles
dc.contributor Dept Integrat Biomed Sci
dc.contributor Universitat D'alacant
dc.contributor Dept Earth Ocean & Atmospher Sci
dc.contributor Universite Paris Saclay (comue)
dc.contributor Utrecht University
dc.contributor Dept Pathobiol
dc.contributor University Of Liverpool
dc.contributor Univ Tennessee
dc.contributor Univ Vienna
dc.contributor Ctr Evolut & Med
dc.contributor Div Computat Syst Biol
dc.contributor University Of Michigan
dc.contributor University Of British Columbia
dc.contributor Dept Microbiol & Immunol
dc.contributor University Of Maryland Baltimore
dc.contributor University Of Southern California
dc.contributor Kyoto University
dc.contributor Fac Pharm
dc.contributor University Of California Davis
dc.contributor Nih
dc.contributor Univ Michigan
dc.contributor Lab Gene Technol
dc.contributor Univ Queensland
dc.contributor J Craig Venter Inst
dc.contributor Dept Bot
dc.contributor Australian Institute Of Marine Science
dc.contributor Grad Sch Agr
dc.contributor Institut Pasteur Paris
dc.contributor Natl Lib Med
dc.contributor Nih National Library Of Medicine (nlm)
dc.contributor Nih National Institute Of Allergy & Infectious Diseases (niaid)
dc.contributor University Of Arizona
dc.contributor Univ Clermont Auvergne
dc.contributor University Of California San Diego
dc.contributor Integrated Res Facil Ft Detrick
dc.contributor Dept Plant Sci & Plant Pathol
dc.contributor Max Planck Society
dc.contributor University Of Tennessee Knoxville
dc.contributor Univ Calif Davis
dc.contributor Dept Prod Vegetal & Microbiol
dc.contributor Ontario Vet Coll
dc.contributor Montana State Univ
dc.contributor Univ Cape Town
dc.contributor Evolutionary Genom Grp
dc.contributor University Of Delaware
dc.contributor Radboud Univ Nijmegen
dc.contributor National Institute Of Genetics (nig) - Japan
dc.contributor Dept Immunol
dc.contributor Dept Agr & Biosyst Engn
dc.contributor Montana State University Bozeman
dc.contributor Theoret Biol & Bioinformat
dc.contributor Univ Guelph
dc.contributor Sch Chem & Mol Biosci
dc.contributor Univ Southern Calif
dc.contributor Vanderbilt Univ
dc.contributor Cnrs - Institute Of Ecology & Environment (inee)
dc.contributor Dept Biol Sci & Pathol
dc.contributor Universite Clermont Auvergne (uca)
dc.contributor Univ Calif Irvine
dc.contributor Inst Integrat Biol
dc.contributor Univ Calif San Diego
dc.contributor Arizona State University
dc.contributor Micalis Inst
dc.contributor Dept Plant Pathol
dc.contributor Ohio State Univ
dc.contributor Australian Ctr Ecogen
dc.contributor Res Inst Bio5
dc.contributor Eth Zurich
dc.contributor Dept Comp Sci
dc.contributor Inst Pasteur
dc.contributor Coll Marine Sci
dc.contributor Univ Utrecht
dc.contributor Delaware Biotechnol Inst
dc.contributor University Of Hawaii Manoa
dc.contributor Med Ctr
dc.contributor European Bioinformat Inst Embl Ebi
dc.contributor University Of California System
dc.contributor Sch Life Sci
dc.contributor Le Reseau International Des Instituts Pasteur (riip)
dc.contributor Colorado State Univ
dc.contributor University Of Exeter
dc.contributor Bioinformat Program
dc.contributor Dept Civil Environm & Geodet Engn
dc.contributor Dept Oceanog
dc.contributor University Of Queensland
dc.contributor Loyola Univ
dc.contributor Univ Alicante
dc.contributor Ird,mio,um 110
dc.contributor Univ Paris Saclay
dc.contributor Ohio State University
dc.contributor Australian Inst Marine Sci
dc.contributor Umr 6023
dc.contributor University Of Guelph
dc.contributor Univ Arizona
dc.contributor Ctr Mol & Biomol Informat
dc.contributor Dept Biol Sci
dc.contributor University Of The Andes Colombia
dc.contributor Univ Exeter
dc.contributor Lmge
dc.contributor Institut De Recherche Pour Le Developpement (ird)
dc.contributor Centre National De La Recherche Scientifique (cnrs)
dc.contributor Univ Hawaii Manoa
dc.contributor Universite Clermont Auvergne & Associes
dc.contributor Sch Med
dc.contributor Aix-marseille Universite
dc.contributor Inst Chem Res
dc.contributor Swiss Fed Inst Technol
dc.contributor Dept Microbiol
dc.contributor Natl Ctr Biotechnol Informat
dc.contributor Joint Genome Inst
dc.contributor Univ Maryland
dc.contributor Cairo Univ
dc.contributor Aix Marseille Univ
dc.contributor Texas A&m Univ
dc.contributor Ku Leuven
dc.contributor Us Doe
dc.contributor Inst Oceans & Fisheries
dc.contributor.author ELOE-FADROSH, EMILEY A.
dc.contributor.author ADRIAENSSENS, EVELIEN M.
dc.contributor.author KOONIN, EUGENE V.
dc.contributor.author KROPINSKI, ANDREW M.
dc.contributor.author KUHN, JENS H.
dc.contributor.author LAVIGNE, ROB
dc.contributor.author VARSANI, ARVIND
dc.contributor.author AMID, CLARA
dc.contributor.author BORDENSTEIN, SETH R.
dc.contributor.author BREITBART, MYA
dc.contributor.author COCHRANE, GUY R.
dc.contributor.author DESNUES, CHRISTELLE
dc.contributor.author EMERSON, JOANNE B.
dc.contributor.author ENAULT, FRANCOIS
dc.contributor.author HINGAMP, PASCAL
dc.contributor.author HUGENHOLTZ, PHILIP
dc.contributor.author IVANOVA, NATALIA N.
dc.contributor.author LABONTE, JESSICA M.
dc.contributor.author MALMSTROM, REX R.
dc.contributor.author MIZRACHI, ILENE KARSCH
dc.contributor.author OGATA, HIROYUKI
dc.contributor.author PETIT, MARIE-AGNES
dc.contributor.author PUTONTI, CATHERINE
dc.contributor.author REYES, ALEJANDRO
dc.contributor.author RODRIGUEZ-VALERA, FRANCISCO
dc.contributor.author SCHRIML, LYNN
dc.contributor.author SCHULZ, FREDERIK
dc.contributor.author SULLIVAN, MATTHEW B.
dc.contributor.author SUTTLE, CURTIS A.
dc.contributor.author TEMPERTON, BEN
dc.contributor.author THURBER, REBECCA VEGA
dc.contributor.author WEBSTER, NICOLE S.
dc.contributor.author WILHELM, STEVEN W.
dc.contributor.author WOMMACK, K. ERIC
dc.contributor.author WRIGHTON, KELLY C.
dc.contributor.author YOSHIDA, TAKASHI
dc.contributor.author YOUNG, MARK J.
dc.contributor.author ALLEN, LISA ZEIGLER
dc.contributor.author KYRPIDES, NIKOS C.
dc.contributor.author ROUX, SIMON
dc.contributor.author DUTILH, BAS E.
dc.contributor.author KRUPOVIC, MART
dc.contributor.author BRISTER, J. RODNEY
dc.contributor.author AZIZ, RAMY K.
dc.contributor.author BORK, PEER
dc.contributor.author DALY, REBECCA A.
dc.contributor.author DUHAIME, MELISSA B.
dc.contributor.author FUHRMAN, JED A.
dc.contributor.author HURWITZ, BONNIE L.
dc.contributor.author LEE, KYUNG-BUM
dc.contributor.author MARTINEZ-GARCIA, MANUEL
dc.contributor.author PAEZ-ESPINO, DAVID
dc.contributor.author RATTEI, THOMAS
dc.contributor.author ROSARIO, KARYNA
dc.contributor.author STEWARD, GRIEG F.
dc.contributor.author SUNAGAWA, SHINICHI
dc.contributor.author TRINGE, SUSANNAH G.
dc.contributor.author WHITESON, KATRINE L.
dc.contributor.author WOYKE, TANJA
dc.contributor.author YILMAZ, PELIN
dc.contributor.author YUTIN, NATALYA
dc.date.accessioned 2019-01-20T19:02:29Z
dc.date.accessioned 2019-01-20T19:02:29Z
dc.date.accessioned 2019-02-11T06:24:03Z
dc.date.available 2019-01-20T19:02:29Z
dc.date.available 2019-01-20T19:02:29Z
dc.date.available 2019-02-11T06:24:03Z
dc.date.issued 2019-01-01
dc.identifier.citation Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonte JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Paez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology 37(1): 29-37
dc.identifier.issn 1087-0156
dc.identifier.uri http://epubs.aims.gov.au/11068/14941
dc.description.abstract We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (M I MAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.
dc.description.sponsorship This work was supported by the Laboratory Directed Research and Development Program of Lawrence Berkeley National Laboratory under US Department of Energy Contract No. DE-AC02-05CH11231 for S.R.; the Netherlands Organization for Scientific Research (NWO) Vidi grant 864.14.004 for B.E.D.; the Intramural Research Program of the National Library of Medicine, National Institutes of Health for E.V.K., I.K.M., J.R.B. and N.Y.; the Virus-X project (EU Horizon 2020, No. 685778) for F.E. and M.K.; Battelle Memorial Institute's prime contract with the US National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272200700016I for J.H.K.; the GOA grant "Bacteriophage Biosystems" from KU Leuven for R.L.; the European Molecular Biology Laboratory for C.A. and G.R.C.; Cairo University Grant 2016-57 for R.K.A.; National Science Foundation award 1456778, National Institutes of Health awards R01 AI132581 and R21 HD086833, and The Vanderbilt Microbiome Initiative award for S.R.B.;National Science Foundation awards DEB-1239976 for M.B. and K.R. and DEB-1555854 for M.B.; the NSF Early Career award DEB-1555854 and NSF Dimensions of Biodiversity #1342701 for K.C.W. and R.A.D.; the Agence Nationale de la Recherche JCJC grant ANR-13-JSV6-0004 and Investissements d'Avenir Mediterranee Infection 10-IAHU-03 for C.D.; the Gordon and Betty Moore Foundation Marine Microbiology Initiative No. 3779 and the Simons Foundation for J.A.F.; the French government "Investissements d'Avenir" program OCEANOMICS ANR-11-BTBR-0008 and European FEDER Fund 1166-39417 for P. Hingamp; Australian Research Council Laureate Fellowship FL150100038 to P. Hugenholtz the National Science Foundation award 1801367 and C-DEBI Research Grant for J.M.L.; the Gordon and Betty Moore Foundation grant 5334 and Ministry of Economy and Competitivity refs. CGL2013-40564-R and SAF2013-49267-EXP for M.M.-G.; the Grant-in-Aid for Scientific Research on Innovative Areas from the Ministry of Education, Culture, Science, Sports, and Technology (MEXT) of Japan No. 16H06429, 16K21723, and 16H06437 for H.O. and T.Y.; National Science Foundation award DBI-1661357 to C.P.; the Ministry of Economy and Competitivity ref CGL2016-76273-P (cofunded with FEDER funds) for F.R.-V.; the Gordon and Betty Moore Foundation awards 3305 and 3790 and NSF Biological Oceanography OCE 1536989 for M.B.S.;the ETH Zurich and Helmut Horten Foundation and the Novartis Foundation for Medical-Biological Research (17B077) for S.S.; a BIOS-SCOPE award from Simons Foundation International and NERC award NE/P008534/1 to B.T.; NSF Biological Oceanography Grant 1635913 for R.V.T.; the Australian Research Council Future Fellowship FT120100480 for N.S.W.; a Gilead Sciences Cystic Fibrosis Research Scholarship for K.L.W.; Gordon and Better Moore Foundation Grant 4971 for S.W.W.; the NSF EPSCoR grant 1736030 for K.E.W.; the National Science Foundation award DEB-4W4596 and National Institutes of Health award R01 GM117361 for M.J.Y.; the Gordon and Betty Moore Foundation No. 7000 and the National Oceanic and Atmospheric Administration (NOAA) under award NA15OAR4320071 for L.Z.A. DDBJ is supported by ROIS and MEXT. The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of the US Department of Energy under contract no. DE-AC02-05CH11231.
dc.description.sponsorship The views and conclusions contained in this document are those of the authors and should not be interpreted as necessarily representing the official policies, either expressed or implied, of the US Department of Health and Human Services or of the institutions and companies affiliated with the authors. B.E.D., A.K., M.K., J.H.K., R.L. and A.V. are members of the ICTV Executive Committee, but the views and opinions expressed are those of the authors and not those of the ICTV.
dc.language English
dc.subject Pipeline
dc.subject Discovery
dc.subject Phage
dc.subject Metagenomics
dc.subject Taxonomy
dc.subject Dna Viruses
dc.subject Annotation
dc.subject Dynamics
dc.subject Biotechnology & Applied Microbiology
dc.subject Prediction
dc.subject Committee
dc.title Minimum Information about an Uncultivated Virus Genome (MIUViG)
dc.type journal article
dc.identifier.doi 10.1038/nbt.4306
dc.identifier.wos WOS:000454804600016


Files in this item

Files Size Format View

There are no files associated with this item.

This item appears in the following Collection(s)

Show simple item record

Search Publication


Browse

My Account